TY - JOUR
T1 - Methodology to create 3D models of COVID-19 pathologies for virtual clinical trials
AU - Rodriguez Perez, Sunay
AU - Coolen, Johan
AU - Marshall, Nicholas W.
AU - Cockmartin, Lesley
AU - Biebaû, Charlotte
AU - Desmet, Koen
AU - De Wever, Walter
AU - Struelens, Lara
AU - Bosmans, Hilde
N1 - Score=10
PY - 2021/1/4
Y1 - 2021/1/4
N2 - Purpose: We describe the creation of computational models of lung pathologies indicative of
COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for taskspecific
optimization of chest x-ray (CXR) imaging.
Approach: Images of COVID-19 patients confirmed by computed tomography were used to
segment areas of increased attenuation in the lungs, all compatible with ground glass opacities
and consolidations. Using a modeling methodology, the segmented pathologies were converted
to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh
thorax phantom. The models were then voxelized with a resolution of 0.5 × 0.5 × 0.5 mm3 and
used as input in a simulation framework to generate radiographic images. Primary projections
were generated via ray tracing while the Monte Carlo transport code was used for the scattered
radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical
image processing. Example images generated at 120 kVp were used for the validation of the
models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI)
software for the detection of COVID-19.
Results: Nine models of COVID-19 associated pathologies were created, covering a range of
disease severity. The realism of the models was confirmed by experienced radiologists and by
dedicated AI software.
Conclusions: A methodology has been developed for the rapid generation of realistic 3D models
of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for
VCTs for testing detection and triaging of COVID-19 suspected cases.
AB - Purpose: We describe the creation of computational models of lung pathologies indicative of
COVID-19 disease. The models are intended for use in virtual clinical trials (VCT) for taskspecific
optimization of chest x-ray (CXR) imaging.
Approach: Images of COVID-19 patients confirmed by computed tomography were used to
segment areas of increased attenuation in the lungs, all compatible with ground glass opacities
and consolidations. Using a modeling methodology, the segmented pathologies were converted
to polygonal meshes and adapted to fit the lungs of a previously developed polygonal mesh
thorax phantom. The models were then voxelized with a resolution of 0.5 × 0.5 × 0.5 mm3 and
used as input in a simulation framework to generate radiographic images. Primary projections
were generated via ray tracing while the Monte Carlo transport code was used for the scattered
radiation. Realistic sharpness and noise characteristics were also simulated, followed by clinical
image processing. Example images generated at 120 kVp were used for the validation of the
models in a reader study. Additionally, images were uploaded to an Artificial Intelligence (AI)
software for the detection of COVID-19.
Results: Nine models of COVID-19 associated pathologies were created, covering a range of
disease severity. The realism of the models was confirmed by experienced radiologists and by
dedicated AI software.
Conclusions: A methodology has been developed for the rapid generation of realistic 3D models
of a large range of COVID-19 pathologies. The modeling framework can be used as the basis for
VCTs for testing detection and triaging of COVID-19 suspected cases.
KW - COVID-19 pathologies
KW - Voxel phantoms
KW - Mesh modeling
KW - COVID-19 imaging
KW - Computed tomography segmentation
KW - Computer simulations
UR - https://ecm.sckcen.be/OTCS/llisapi.dll/open/42348628
U2 - 10.1117/1.JMI.8.S1.013501
DO - 10.1117/1.JMI.8.S1.013501
M3 - Special issue
SN - 2329-4302
VL - 8
SP - 1
EP - 17
JO - Journal of Medical Imaging
JF - Journal of Medical Imaging
IS - S1
ER -